卓越的手性测量
Exceptional Measurement of Chirality

原始链接: https://www.rsc.org/news/2019/july/exceptional-measurement-of-chirality

## 分子检测中的手性突破 许多分子存在“左手”和“右手”形式(对映异构体),尽管是镜像,但可能产生截然不同的影响——以药物反应停及其灾难性副作用为例。因此,准确确定分子的“手性”对于制药和农业等领域至关重要。 一种称为振动圆二色性 (VCD) 的技术利用偏振光来区分这些形式,但由于分子柔性和计算不确定性而受到技术复杂性的限制。 最近发表在《化学科学》上的研究,通过一种新颖的“遗传”算法克服了这些障碍。该算法考虑了分子计算中的不确定性,从而产生更可靠和可量化的结果。这项突破确保正确的手性始终与实验数据一致,为识别手性分子提供了一种显著改进的方法。 这项进展使 VCD 更易于使用,并为实时生化监测和更快的药物筛选等应用打开了大门。

一个黑客新闻的讨论围绕着一种新的“手性异常测量”技术(链接来自rsc.org)。 讨论迅速转向一个根本问题:如何向没有共同文化背景的生物定义“左”和“右”——这个悖论曾被之前的Y Combinator讨论和费曼的讲座强调。 用户们争论可能的解决方案,包括观察中微子作为一种普遍可检测的现象,以此建立一个共同的参考框架。 另一些人质疑这项新技术在实践中的应用,想知道它是否比现有的方法(如偏振法)提供更精确的对映异构体组成数据。 最后的讨论推测,人工智能模型,特别是flow-matching或扩散模型,可以使用这项新技术生成的数据来确定手性。 这篇文章最后提醒了Y Combinator的申请。
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原文

Imagine trying to shake a friend’s left hand with your own right hand – it wouldn’t be a very good fit.

Similarly, some molecules can be left or right-handed. Although these are mirror images – the chemistry term is enantiomers, or chiral molecules – they can interact completely differently with other molecules found in nature.

This phenomenon can be incredibly important in the pharmaceutical, agricultural and other chemical industries. A well-known example of this is the drug thalidomide, prescribed during 1957-1961 as a sedative for pregnant women. Tragically, one of the mirror-image molecules caused birth defects in thousands of infants.

And although methods to effectively detect and monitor chirality are vital, they are also technically complex. Now, cutting edge research published in Chemical Science has overcome several technical hurdles faced by a technique called VCD.

"It is now possible to determine the handedness of molecules much more reliably and with better quantitative measures than before," said corresponding author Wybren Jan Buma, from the University of Amsterdam and Radboud University. "And this is definitely in many respects a breakthrough that is much appreciated in the scientific and application-oriented community."

VCD is a detection technique that distinguishes between mirroring molecules by taking advantage of the fact that light can also be left and right-handed. For instance, left-rotating light interacts differently with different enantiomers – leading to a unique fingerprint.

However, the applications of VCD are currently limited by technical constraints. Theoretical fingerprints have to be corroborated by experimental data to verify which handedness they actually have. Furthermore, measuring enantiomers isn’t as simple as "left is left, and right is right", as molecules are not static and rigid – they are flexible and dynamic in time and space, and variations differ in their relative quantities.

To date, techniques have taken an "average" of the possible theoretical fingerprints. However, this can lead to the mistaking of one handedness for another.

"You might intuitively think that a calculated number is something absolute, without uncertainty, but this is definitely not the case," said Buma. "In the worst case it might be that one type of calculation would lead to the conclusion that the molecule has one particular type of handedness, while another type of calculation would lead to the opposite conclusion."

The researchers overcame this by creating an algorithm which introduced uncertainty in place of the average calculated molecular energies. This was achieved by using a "genetic" algorithm – which uses the principles of evolution and "survival of the fittest" to get optimal results.

Buma said: "The beauty of our approach is that the correct handedness always gives better agreement with the experiment than the opposite handedness, and, even more importantly, that we can give a quantitative measure of how reliable the assignment is.

"Our research, and that of others, has now shown that VCD is in reality a technique that is both easily accessible and opens up unique possibilities for applications, in areas ranging from real-time monitoring of biochemical processes to high-throughput screening of pharmaceutical compounds."

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